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Hello,
I'm getting several errors (below) when running joint VC with Strelka2 in bcbio-nextgen v.1.1.3 (stable). HaplotypeCaller works fine on my input data.
It also looks like Platypus isn't be…
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## Feature Request
### Desired behaviour
Display WDL description, email, author ala CWL
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Would you consider adding a completion source for deoplete/neocomplete/youcomplete based on cwl files from
- kile https://cgit.kde.org/kile.git/tree/src/data/complete,
- latexing https://github.com/…
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A simple workflow which requires a string runs even when no input is provided. `cwltool` fails to run on the same example as expected.
```
[jmichael(BASH)@nodecn011]: cwlexec foo.cwl
[15:51:20.8…
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When using PAPI v2, the execution events for a single job are broken down into a lot of minute actions, and those actions are represented in the timing diagram. The issue is that the level of granular…
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Hello,
When spaces are given in the output file/directory names of cwl descriptions, cwltoil fails with an error. Below are the details:
cwl
```
cwlVersion: v1.0
class: CommandLineTool
requirements:…
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Hi-
I'm doing some evaluation tests of cwl platforms and wanted to include cwl-tes. It looks very interesting.
I was able to get the local compute option working but using slurm is giving me a few…
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I do not think the values for following path are discoverable:
`/tools/{id}/versions/{version-id}/{type}/descriptor/{relative-path}`
I assume the intent is to be able to navigate to subsumed CWL…
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http://www.commonwl.org/v1.0/Workflow.html#WorkflowStepInput
Provides a place to improve visualizations, especially if re-using a CWL tool description that whose input names don't make sense/aren't…
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Going to keep a running log here since there will be a large number of small issues
- ~Docker instructions link to Docker EE instructions rather than CE~
https://docs.docker.com/install/linux/dock…