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https://github.com/wtsi-team112/Pipelines_issues/issues/66
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Hello I have couple of questions,
1. In view mode when I set the CNV size range for example 10,000 inf I also got CNVs with smaller sizes! (CNVs with 4,500, 9,000, 8,500 in size) Is this normal?
2. …
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Hi, I was curious in trying out your tool with some data from some more modern sequencers. I was reading the [section](https://github.com/mlinderm/npsv2?tab=readme-ov-file#preprocessing-to-create-a-st…
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How would you recommend genotyping an array of individuals with sds called from a reference genome? Should we put all the genomes into the command line (alot - in my case, 90 separate haplotypes) or c…
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Currently, lanes are merged after mapping to the library level. Deduplication and damage manipulation take place at this granularity, but genotyping onwards should happen AFTER merging libraries to th…
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Dear developer:
We are using livestock for pan-genome analysis, and we find that the genotyping-pipelines (https://github.com/eblerjana/genotyping-pipelines/tree/main/prepare-vcf-MC), although used f…
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Hello,
can you please tell me from where and how did you download ukb_sqc_v2.txt file?
Thanks
Ana
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Thanks for sharing this wonderful genotyping method. I want to try ISSRseq in a small-scale fish breeding study (300-400 fish, 1000-5000 SNPs). I know the cost depends on many factors. Could you tell…
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Hi,
I am having trouble setting up my samplesheet, I keep getting errors and am confused what exactly I need to put under each column. Is "sampleset" the name of the genetic data file? You refer to i…
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Hello @gjmzajac,
I'm wondering if vices can be used with Axiom array outputs or if it only works on Illumina array outputs?
Thanks!