-
### Description of feature
Calculate the percentage of PacBio read data filtered before alignment. This was flagged by Kamil.
-
### Description of feature
Adapt local modules to the nf-core structure:
```
module_name
├── environment.yml
├── main.nf
├── meta.yml
└── tests
├── main.nf.test
├── main.nf.test.snap
└── …
-
## Bug report
### Expected behavior and actual behavior
Sometimes join function fails matching entries with same key values. Tricky bit is that this happens most of the time but not always.
…
-
### Description of the bug
I'm using the nextflow cut&run pipeline which I used last year for cut&run analysis. I'm now getting an error from the mark duplicates step citing 'handling an unexpected c…
-
when running the module api platform tests (on str2 chassis), there is a kernel panic on the supervisor during the reboot test (while trying to reboot lc7).
log:
```
2024 Nov 14 23:21:43.961688 s…
-
Merqury inputs should include the meryl db (created from reads), and the _assembly_.
https://github.com/nf-core/genomeqc/blob/5e5f897730524eb771aa574920a42064876f1ea1/modules/nf-core/merqury/merqury…
-
Include subsections to group pages within a section.
Can be just the index pages to start with. Needs caution in the sidebar to not get cluttered, so maybe don't add there at all.
Can be don…
ewels updated
6 months ago
-
Hi,
I could see several errors in the log, below is an extract !
My router is a TP-LINK Archer C6 v2 (EUR) with SNAPSHOT r18802-5205010a54
```
[ 3990.970979] ------------[ cut here ]------------…
-
### Description of the bug
Hi
I have hit an error trying to run one of the test datasets that merges multiple fastq files per sample (`samplesheet.multi_lanes.csv`).
I have to say first that wh…
-
If you pass an input file to an output file directly, the snapshot includes the absolute path of the input file. This causes problems because the snapshot is not transferable.
workflow.nf:
```next…