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## **Describe the bug**
I tried to run this pipeline multiple times, and it kept getting stalled at task=atac.read_genome_tsv:-1. But there's no error message. It only stopped when timeout.
f1ce-4…
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Some attributes of the `Project` class were changed to a `@property`.
The user should be prohibited (raise error) or warned about this when trying to `setattr` on this type of attribute to prevent un…
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## **Describe the bug**
I have followed the instructions for installation of the pipeline using conda, the installation was successfully completed but when I run it I get the following error:
Sta…
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Goal: Once everything is done once i.e., every module was configured and executed, end-to-end execution should be possible for both, iterations with changed parameters and reproducibility.
- [ ] ad…
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Hi there,
I have a problem running the pipeline which I have set up on a SLURM HPC. It had worked previously and I used it regularly for the best part of a year. However it stopped working after a …
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When run the tutorial in the document:
https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
```{r}
projHeme2
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Hi @KenjiKamimoto-wustl122,
Thank you for sharing this useful package with us. I have already learned how to process a Bulk ATAC-seq data. However, I have 32 bulk ATAC-seq datasets here, and I am …
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Hello,
I'm trying to run Augur on single-cell ATAC-seq data on human PBMCs from healthy vs disease subjects.
However, I am getting the following error: "no cell type had at least 20 cells in all con…
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```
object
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@thardy615
Please do a fresh pull and take a look at ```` prep/tannenbaum/geneTracks.R````
It won't run for you until you install the packages named at the top - but even before we/you sort th…