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Hi kai,
When using Taiji, I encountered some issues while using a YAML file as input. The error message I encountered is:
there is my input.yml:
```python
RNA-seq:
- id: RNA_NIP_0h
…
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Hello,
Thanks for this very useful package!
I just have a few questions after runnning on single-cell ATAC-Seq libraries generated from the 10X multiome kit. I ran using the following commands:
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Hi,
I am trying to run celltype/tissue specific analysis as mentioned in the tutorial on ATAC-seq data.
I obtained narrowPeak files from MACS2. I was wondering how to approach from there to perf…
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Hallo, I wanna ask if its possible for you to upload the code used for data-integration of ATAC-sequencing data with LIGER :)
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I am trying to train ChromBPNet on Arabidopsis ATAC-seq data, but run into the error `"Input file shifts inconsistent"` as in #153, #174 and #176. Having read through these other issues, I was able to…
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**Describe the bug**
We run the following command for ATAC sample:
> mgatk tenx -i cellranger/ATAC-SC05/possorted_bam.bam -n ATAC-SC05 -o ATAC_mgatk/ATAC-SC05 -c 32 -bt CB -b cellranger/ATAC-SC…
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Hi,
when I tried to run caper with encode-atac-pipeline, I could see the job was submitted to the lsf system, but the job disappear immediately without any reports.
when I looked into the detai…
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## **Describe the bug**
I have followed the instructions for installation of the pipeline using conda, the installation was successfully completed but when I run it I get the following error:
Sta…
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When run the tutorial in the document:
https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
```{r}
projHeme2
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Hi,
I read your Nature publication (https://doi.org/10.1038/s41467-018-07771-0) and would love to generate aggregate single cell profiles in figure 3A and 4D's bottom panel for my data.
Could …