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epigen
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MrBiomics
MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale
MIT License
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containerize modules
#37
sreichl
opened
2 weeks ago
0
Monitoring using panoptes
#36
sreichl
opened
2 weeks ago
0
Roadmap v1.0.0
#35
sreichl
opened
2 weeks ago
0
Enable continuity i.e., End-to-End execution
#34
sreichl
opened
2 weeks ago
2
Add to Resources on Bock Lab Website
#33
sreichl
opened
1 month ago
0
add to docs "prerequisites" in terms of skills
#32
sreichl
opened
1 month ago
0
polish all config file documentations
#31
sreichl
opened
1 month ago
1
add to all YAML environment specifications `nodefaults`
#30
sreichl
opened
2 months ago
0
Module usage in Projects - Wiki entry with full code, config, etc.
#29
sreichl
opened
2 months ago
2
test portability
#28
sreichl
opened
2 months ago
0
visualizations of modules and recipes
#27
sreichl
opened
2 months ago
0
(re-)visit and consider using PEP/PEPkit
#26
sreichl
opened
2 months ago
0
add slides from talks to repo
#25
sreichl
closed
2 months ago
0
Module-specific default profile not being used
#24
fwzhao
opened
2 months ago
1
Update README.md
#23
sreichl
closed
2 months ago
0
module upgrade
#22
sreichl
closed
2 months ago
0
Consider rendering result tables using datavzrd
#21
sreichl
opened
2 months ago
1
Provide example/test data and results for each module
#20
sreichl
opened
2 months ago
0
change env, annot, & config export rules
#19
sreichl
closed
2 months ago
0
work through master note in Notion
#18
sreichl
opened
3 months ago
0
transfer all planned RECIPEs to wiki
#17
sreichl
closed
3 months ago
0
Create meaningful Home page and Sidebar for the wiki
#16
sreichl
closed
3 months ago
0
Move the majority of the current README to the Wiki
#15
sreichl
closed
3 months ago
0
Update README_template.md
#14
burtonjake
closed
3 months ago
1
adapt modules for snakemake 8
#13
burtonjake
closed
2 months ago
5
Bump to Snakemake v8
#12
sreichl
closed
2 months ago
10
support VITESSCE for interactive result exploration
#11
sreichl
opened
5 months ago
1
make repo activity plot for all MR.P modules
#10
sreichl
closed
2 months ago
3
check recommended up/downstream MR.P modules in resources of all READMEs
#9
sreichl
closed
2 months ago
3
test Snakemake conda environment cleanup
#8
sreichl
opened
9 months ago
0
test instructions provided on Snakemake workflow catalogue using snakedeploy for my modules
#7
sreichl
opened
9 months ago
0
improve README with visualizations & emojis
#6
sreichl
closed
2 months ago
0
lift tasks from my Notion to GitHub (here)
#5
sreichl
closed
2 weeks ago
0
accelerate CSV read & write in R with fread & fwrite
#4
sreichl
closed
5 months ago
0
remove SDIR from all workflows
#3
sreichl
closed
6 months ago
0
switch all visualizations from panels to single plots
#2
sreichl
closed
5 months ago
0
add call to STAR repos if useful to all READMEs
#1
sreichl
closed
6 months ago
0