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### Description of feature
I suggest to add a process that checks Illumina Samplesheets for consistency before starting bclconvert/bcl2fastq. This ensures that errors are caught early with useful err…
grst updated
3 months ago
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Hi,
Would it be possible to add a quick comment on how to use subworkflows?
Do I just add them as in a "master" workflow?
Thanks
M
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### Description of the bug
When opening a run stats in wetlab, the following error appears:
```
ValueError at /wetlab/displayRun=13926/
'Completed' is not in list
Request Method: GET
Request URL…
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### Description of bug
After updating the MultiQC module in the nf-core/demultiplex pipeline, the MultiQC report no longer displayed the Kraken section. I originally created an issue for this https…
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The current suggestion is that we shouldn't have links to external files hosted on git.
If we don't want these, then we'll need to go through and do something with the tests for these files
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**Aim 1:** Curate or develop Nextflow Modules and Templates for Biowulf’s most utilized modules.
**Task 1:** "Curate required references and real/synthetic benchmarking datasets for bioinformatics …
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Filled together with @Karl-Svard
As a production user who encounters a sample sheet of a flow cell with **one sample per lane** and that has no index in its samples,
I want the sample sheet not to f…
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Got this error:
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- star[version='>=2.7.1a']
- bcl2fastq2[version='>=2.19']
- samba…
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### Description of feature
I think it would be nice to include the demux samplesheet that is used as input for bcl2fastq, bclconvert etc. into the flowcell output folder for posteriority. The input s…
grst updated
3 months ago
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Hi @j4cko, first of all, thank you for spending time developing this tool, it is very usefull. I'm currently working building a nextflow module around your tool for an nf-core demultiplexing pipeline:…