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toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0
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Having "`*run_*`" in the BUSCO output directory name causes an error (e.g. BUSCO5_rerun_XYZ_output)
https://github.com/jamiemcg/BUSCO_phylogenomics/blob/0589f6ce883c3ebfa3b7521339d8caaf7f8bc526/…
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Hi Alex,
I used busco to evaluate the genome_assembly.fa file and the resulting file for syngraph, I extracted the *full_table.tsv file as shown below,:
0at7088 25 6419737 6528949
1at7088 28 9918…
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The BUSCO results in multiqc parse the file short-summary, but it fetches the lineage to name the tabs and the graphs.
I would like all the naming from the BUSCO tools to use the sample instead of …
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Hi,
While trying to decide which order I should merge assemblies, I realized there is something happening with quickmerge which I don't understand.
As you recommended on the wiki, I used the "be…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
v1.8.13
**Describe the bug**
A clear and concise des…
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Hello,
I've seen this on a couple of issues that are both closed and open (#113 and #100, respectively), but none of the threads have actually explained or shown how they have fixed the problem.
…
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Camille,
I'd like to make a request that ANY version of BUSCO be acceptable. I know this is a PITA the way the py scripts in BUSCO 1.x are named. A much improved BUSCO 2.x is about the be released, …
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see https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastNews, 1st item: "BLAST+ 2.10.1 is released – Fix for TBLASTN Multi-Threading issue."
This could mean that busco can use the same …
cschu updated
4 years ago
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Hi!
I am trying to annotate a mammalian genome about 2.7Gb in size, I used BRAKER, GeneMarkS-T and TSEBRA "long_reads" branch. I want to use this to play the role of Iso-seq data. The configuration …