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## Timing request
As originally discussed in https://github.com/craigcitro/r-travis/pull/119#issuecomment-55450978, it would be useful to track time spent on the R CMD check. This information is need…
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Cannot install right now because ggbio 1.13.10 uses the previous namespace information from IRanges. This can be fixed by using the correct S4Vectors namespace imports.
Since ggbio is under active de…
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Waiting for https://github.com/lcolladotor/derfinderPlot/issues/1 to be resolved before adding `derfinderPlot` to the suggested packages.
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Hi,
From answering https://support.bioconductor.org/p/62551/ I think that `bumphunter` should include some docs on how to use `annotateNearest()` with an annotation other than **hg19**. Looking at th…
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Hi,
I'm asking here because you might know what the problem is. I am re-running an analysis I did before and for some reason it's taking much longer: basically `pandoc` hangs.
In particular, one cas…
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Needs some experimentation.....
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Depending on the user's current package configuration, installing the package directly from GitHub may fail. I had to do the following in order to install derfinder:
- install Rcpp and RcppArmadillo …
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is it possible to handle strand-specific alignments? (i.e. get counts and run the pipeline for each strand separately?)
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Hello,
I'm writing a short application note for https://github.com/lcolladotor/derfinderReport and want to cite `knitrBootstrap`. I used the information from `citation('knitrBootstrap')` but was wond…
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I have tried running it multiple times and this is the error I am receiving.
Traceback (most recent call last):
File "countReads.py", line 144, in
countReadlets(options.file, options.output, …