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**Submitting author:** @agahkarakuzu (Agah Karakuzu)
**Repository:** https://github.com/agahkarakuzu/template
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @pbel…
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**What happened?**
I am running HALFpipe in a HPC on a set of subjects. I am providing T1 and resting state data. The preprocessing I am using contains generating atlas-based connectivity matrices, w…
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### Describe the bug
```
Node: cpac_113622100_1.create_aroma_169.aroma_wf
Working directory: /mnt/Friar/rs/BIDS_DATA/derivatives/cpac1.8.6proc001/outputs/working/pipeline_APPCore_2/cpac_11362…
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## Summary
NiBabies T2w-only (MCRIBS) subjects fail
## Additional details
- xcp_d version: 0.6.1
- Docker version:
- Singularity version: 1.2.5-1.el7
### What were you trying to do?
Ru…
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Hi,
Thank you very much for making xcp pipeline available!
I have ran my data through it and for the most part it seems to have run successfully, however the fcon folder contains only empty file…
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I tried the current 1.2.3 version with the T1w and bold data preprocessed using fMRIprep 20.2.1, 20.2.0, or 20.2.0rc2.
In general, everything works quite well in the volumetric space analysis.
Howev…
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### What happened?
An error occurs during preprocessing of a single subject, which results in no structural images.
Each session has t1, flair and bold images. I tried deleting t1w images from se…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [ ] Linux
- [ ] Mac
- [X] Windows
### Operating system version
Windows 11
…
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### What happened?
Using the new alpha release, fMRIPrep quickly failed. Note that this same command worked on the same dataset at an earlier version of the `next` branch pulled about a week ago.
…
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### What happened?
For some of the subjects, fMRIprep outputs this error:
Node: fmriprep_22_0_wf.single_subject_EXCI0153_wf.func_preproc_ses_1_task_rest_wf.initial_boldref_wf.get_dummy
Working di…