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During the `Reading Gene Annotations` step in the `sc_long_pipeline()` workflow, I'm getting a `_Map_base::at` error.
I'm using a decompressed fastq for the BLAZE output (ran that stand-alone). I'…
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Alex has create a test file containing all human annotations that GO Central want to load:
> The set of protein accessions included in this file is based on UniProt reference proteomes, which provide…
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Hi~
I used the hisat2-stringtie pipeline to deal with RNA-seq data and got a result with MSTRG tags. Some of them had gene name which was convenient to do function annotation after. But 1/3 of my dat…
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Hey hii, i like the the mobileOG db and the small script you have given for quick analysis. do u have idea to update this database? will this be maintained going forward?
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Currently we infer human gene to phenotype annotations by making the join
gene - disease (through a variant)
disease - phenotype
With some minor filtering of gene disease associations for marker…
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The aim is to be able to obtain the full transcript sequence in case of unannotated intron retention events. Following the StringTie workflow, this would mean considering retained introns (which have …
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Hi, thanks for the PASApipeline. It's really convenient to use it. I have question about updating the reference lifted gff3 file. Can I use the annotationCompare.conf to that without performing the al…
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I got a problem shown below when i conduct the celseq2 pipeline.
shakename v 5.5.2 is installed
Some parts of the configfiles is
> ##Annotations##
> ##Where is the GTF.gz/GFF.gz/GTF/GFF …
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example: https://pubmed.ncbi.nlm.nih.gov/37081487/
[pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls]( https://pubmed.ncbi.nlm.nih.gov/37081487/)
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