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### Data Owner Name
NHGRI
### Data Owner Country/Region
Afghanistan
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.encodeproject.org
### Social Media Handle
Calvin
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This is an awesome tool, thank you!
I have a suspicion, that with one addition this could be turing-complete (I don't have proof, just gut feeling). Also, this feature would help people to mirror a…
ghost updated
4 years ago
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The column consists of "estimate", "statistic" and "correlation" among others. What do the former mean really?
For example, an X-gene is being unregulated at level of mRNA, then the TF regulating th…
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Hi,
thank you for developing a good package.
I have the strange question. Can i adapt this package for RNA-seq data or it can be used only for single-cell?
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Hi Dr. Shao,
I'm generating the TT-seq analysis to see the influence of acute degradation of a TF on the transcription of mRNAs and eRNAs. I find your transcription unit annotation script - TU_filt…
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Hi guys, really liking the pySCENIC adaptation (saving alot of time in our hands!) however, Im having the following issues with pySCENIC grnboost (through command line) when running on a large integra…
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Here I will be posting discussion posts that promote computational methods for traversing, reconstructing, and identifying signaling pathways and interaction networks within a biological setting. This…
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Hi,
I have binding sites of RNA binding proteins (RBP) analyzed from CLIP-seq data, so I want to do the motif enrichment and RBP-regulon prediction, which's used as input for SCENIC. How can I do t…
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Thank you for providing such high-quality resources. As referenced in the supplementary data of the article, I am seeking a more detailed methodology for constructing GRNs (e.g., metacell, GRN evaluat…
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Hello,
After running my code I found that the transcription factor I wanted did not appear in the results. And since I have used some grn predict tools before, It may be better to use one tool unif…