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Currently there is no way to create a diagram with bar style without odd colouring: in the lower part one can assign colour only to the area, not covered by data points. In some cases this type of col…
Phlya updated
8 years ago
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Hi,
I have a memory consumption problem with `rtracklayer::export.bw` function.
I have a RleList object of size ~320 MB, which I obtained by running `GenomicAlignments::coverage` function on a…
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**User story**
Epigenomic signals around a particular feature type (transcription start site, location of a particular motif) which has many instances across the genome can give insight into regulati…
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There is an issue with operation of the [Dockerhub](https://hub.docker.com/r/fertiglab/pycogaps) version of pycogaps. There is a newer version of docker image available in the [ghcr](https://github.co…
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## User Story
>As a website user
>I want to view and interact with various genome related figures associated to a dataset
>So that I get more perspectives on the data
## Acceptance Criteria
…
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Paper:
http://biorxiv.org/content/early/2016/10/17/081380
Authors:
Umut Eser, L. Stirling Churchman
Abstract:
> Numerous advances in sequencing technologies have revolutionized genomics through gen…
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```
http://bcbio.wordpress.com/2013/05/22/scaling-variant-detection-pipelines-for-wh
ole-genome-sequencing-analysis/
```
Original issue reported on code.google.com by `geo...@marsel.is` on 28 May 2…
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## Figure files
https://drive.google.com/drive/u/0/folders/1okzPLhrenRLOsTjQEAiNYaCzXytKCisr
## Panel legends
- [x] a. Overview of experiment design on profiling the entire brain with snmC-seq3 a…
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Cell by bin
Visualize in higlass
Cell by peaks (in BED + snap files)
Annotated peaks (genomic intervals) per cell
Genome-wide (not necessarily tied to a gene)
Our Pipelines:
- [ ] We need to cre…
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https://www.biorxiv.org/content/early/2018/03/03/275628
> The diagnosis of multidrug resistant and extensively drug resistant tuberculosis is a global health priority. Whole genome sequencing of cl…