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I see a lot of reading material on how to choose the cloud service and how to connect to it. I think I would like to see/add another topic with Cloud for Genomics section called "Dockers and Container…
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As a production user,
I want a feature to get all sample internal ids for the cases I have selected in the trailblazer analysis view,
So that my workflow of delivering samples in lims can be str…
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Dear developers
I ran:
```
/path/to/apps/fixchr/bin/fixchr \
-c /path/to/some_comparative_genomics/syri_Hp1_to_pm1.delta.m.coords \
-r /path/to/some_comparative_genomics/assembly_pm1_v1_upper.f…
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VCF downloaded here http://www.completegenomics.com/public-data/69-Genomes/ causes a parse error when running vcf2wt.
The error can be isolated to a single line vcf as follows:
```
##fileformat=VCFv…
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**Summary**
I propose a breakout session to discuss changes and reorganization of the DC Genomics lessons. After teaching the material with @ryanpeek, @shannonekj, @raynamharris, @AstrobioMike, @abos…
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From https://github.com/Clinical-Genomics/scout/issues/1460
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##Branch
g1.02-studyExperiments
## Groups
Group 1 - Content Types | Ontology | Fields
## Describe
This issue provides the content types and fields expected for the Grassland Genomics gr…
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STAR-Fusion was developed for illumina data,
we have tried running it on ultima genomics data, which is 300bp single-end reads. STAR-Fusion works. But with Ultima, there are no 'SpanningFrag' / dis…
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### Description of the bug
```bash
nextflow run main.nf \
-ansi-log false \
-profile docker,gcp \
-work-dir gs://path/to/bucket/scrnaseq/work \
--input samples.csv \
--protocol…
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Dear Professor,
I noticed that the link to "All processed data" in the "Data and materials availability" section of your study "An atlas of regulatory elements in chicken: A resource for chicken ge…