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Hi, does the VG tool have any support for Apache Spark? I would like to make a variation graph using the tool and then be able to export the graph to use with Apache Spark. If no support is currently …
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I tried the following:
Download the current public sequence resource GFA from https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca.
Then I did:
```
~/software/maffer/…
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I tried `bin/xg` built at commit hash `6871a1e011954483e01ace8a517a78ba1a57b7d9`.
An input file `test.gfa` is following.
```test.gfa
H VN:Z:1.0
S 1 CAAATAAG
S 2 …
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Hi!
I have constructed the multiple graphs and i want to combine that to a single graph file. But I found that both `vg combine` and `vg ids` can combine multiple vg files, and the output size is d…
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
1 month ago
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Hi
I am running the assembly using metaspades. Below the final lines from the log, I don't see any error. I am getting an empty file for the final_assembly.fasta. Which file should correspond to thi…
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Hi there,
I recently run Cactus pangenome pipeline (lastest version) on the cluster, which has been successfully run on your test dataset. When I run `cactus-graphmap-join`, some errors happened as…
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Hi, I was wondering if it were possible for racon to output a gfa file in addition to fasta?
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Thank you very much for developing this plugin.This plugin is very useful, but it produces intermediate files cannot open by QGIS or ArcGIS. So, how to convert it to raster?
In addition ,"add results…
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Hi,
I successfully assembled an _A. thaliana_ genome for which I obtained two partially phased haplotypes of size 148.1 Mb (hap1) and 146.4 Mb (hap2), respectively. These files are in **.fasta** f…