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my query is multiple different protein, if it could be as the input directly for hhblits, or must I split them into many files with each sequence in it
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/Data/RoseTTAFold2NA/RoseTTAFold-All-Atom-2/RoseTTAFold-All-Atom/7u7w_protein/A/log/make_ss.stderr
The file under this path reports an error like this
*** buffer overflow detected ***: psipred termi…
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Hi，
When I run ’run_pyrosetta_ver.sh input.fa .’, the result gets two folders hhblits and log. I don't get five final models. Why is this ?
Thank you
lll16 updated
2 years ago
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I have a fundamental doubt about the difference between Alphafold2 and Parafold running procedure, how to determine whether Parafold is doing Parallel task unlike sequential tasks performed by Alphafo…
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Hi all-
Problems on Summit again. Latest clone won't build with gcc 6.4 at all, problems that look like this:
```
/ccs/home/adaa/HHSuite/hh-suite/lib/simde/simde/x86/sse2.h:4253:62: error: inva…
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## Context
If the template database (such as pdb100) contains the structure of the query sequence, will "hhsearch" return the structure information of the query sequence as a part of template? If so,…
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Hi,
I installed RoseTTAFold-All-Atom exactly as instructed, and then completed missing packages,
2005 pip install hydra-core --upgrade
2007 pip install icecream
2009 pip install assertp…
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```
In file included from /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhviterbialgorithm.cpp:7:
In file included from /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.3.0/src/hhvite…
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Most of my runtime is lost in hhblits which runs on the CPU as opposed to the GPU. Has anyone tried using a GPU-capable equivalent (such as comer2) for this? Any thoughts/comments are appreciated.
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## Expected Behavior
hhblits returning the same .hhr outputs after every run
## Current Behavior
After every run of hhblits (with fixed parameters) on a set of 500 proteins I get different results.…