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Hi,
I've been trying to run `find-motifs` for a few days, but I keep running into errors. I've updated modkit to the newest version (0.3.1), but that doesn't seem to resolve the issue. This specif…
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STRING provides ENSEMBLPROT information on their interactors. We want to get the ENSEMBLEGENE identifiers and currently match via "AnnotationDbi" and corresponding packages. STRING provides a file ([p…
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The command:
```bash
pyensembl install --release 104 --species homo_sapiens
```
The output:
```
2024-09-05 20:37:25,680 - pyensembl.shell - INFO - Running 'install' for EnsemblRelease(rele…
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Hi, I was using command `seqtk subseq uniprot_sprot.fasta name.txt > out.fa`
my name.txt looks like:
```
sp|Q9H2Y7|ZN106_HUMAN Zinc finger protein 106 OS=Homo sapiens OX=9606 GN=ZNF106 PE=1 SV=1
s…
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Hi, I would like to know how STAR usually handles highly variably gene sequences like V(D)J sequences that code for parts of the TCR / BCR (T-cell and B-cell receptors), please?
I guess it depends …
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https://asia.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136250;r=7:36512941-36724494;t=ENST00000617537
Web page Reports that the sequence is 2385 bases long
Ensembl API is in…
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bash create_Drop-seq_reference_metadata.sh \
-n Homo_sapiens_genome_annotation \
-r /mnt/d/linux/ceshi/hg38.fa \
-s Human \
-g /mnt/d/linux/ceshi/hg38.gtf \
-o /mnt/d/linux/ceshi
Er…
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**Is your feature request related to a problem? Please describe.**
I am insterested in download a specific region of the genome. The[ web interface](https://www.ncbi.nlm.nih.gov/labs/virus/vssi) allo…
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I'm sorry for submitting an issue here.
I tried to download these databases using zsync.
https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_…
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Dear developers,
Thanks for creating CircMiMi, it's an easy to use and very useful tool. However, I am having problems creating an hg19 reference genome instead of hg38. I get the following error:…