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Hi,
First, thanks for making this available.
This is more of a question rather than issue. So the coordinates given in the output are in the + strand or the - strand? So is the amplicon sequence…
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May I ask how to improve pae_interaction, as the pae_interaction I got is always above 10 ?
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@jbloom one of the reviewers had the following comment:
_Different methods might exhibit various efficiencies for predicting mutations on different regions of the Spike. Is it possible to analyze t…
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Currently locus definitions can be refined by in silico PCR reactions that are predicted to amplify the region in question. Another option would be to require the presence of additional loci within a…
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Hi Basenji Developers, thanks a lot your project.
I would like to use your software to identify distal regulatory elements and outline their driving motives in K562 and PrEC cell lines. I see that …
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Hello,
I did the tutorial and after 50k steps fnet is able to 'in-silico' label the nuclei. However my use case is that I want to be able to segment cells (cytoplasm and nucleus) from the surrounding…
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Dear DIA-NN team,
Currently we are running DIA-NN with TimsTOF SCP acquired samples. We get very good signal and clean spectra. Also the calibration status of the instrument is good (below 10ppm)…
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Hello! I was trying to use `fetch_region.py` to conduct in silico digest.
I trusted that we dowloaded the input genome.fa file correctly from Ensembl and used it to generate the GATC.position.bed.gz…
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## :bug: Bug
Points layers (and other non-image layers) scaling is not consistent.
The video below shows a point at the correct position in 2D; when it goes to 3D, it changes its location, and aft…
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https://doi.org/10.1101/390153
> A fundamental problem in biomedical research is the low number of observations available, mostly due to a lack of available biosamples, prohibitive costs, or ethica…