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Using PaRSEC commit `7f81a1b` (2023-01-19) and DPLASMA commit `75012ef3f` (2023-01-23), the m, n, and k data in the trace of a GEMM is not present when using the dtd interface.
### To Reproduce
1.…
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Hello!
I have been exploring the package and had a question on how the 'precursor_indices' is defined.
When I filter based on the precursor index (1 in this case), get two distinct quad isolation.…
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- [ ] [Correlated gene modules uncovered by high-precision single-cell transcriptomics](https://www.pnas.org/doi/abs/10.1073/pnas.2206938119)
- [x] [Dynamics of single-cell protein covariation during…
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### Description of feature
Inmunopeptidomics is one of the use cases that quantms can try to handle in the same way that we are planning to handle Proteogenomics. For Inmunopeptidomics we will need t…
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Hi @lucidrains , thanks for your awesome work! I used your causal conv implementation and trained on a video vqgan network. The results are as follows:
Original clip sequence:
![36500_image](https:…
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Hi Vadim,
I am doing limited-proteolysis in proteome. As I use MaxQuant to analyse DDA data, I select semi-specific as digestion type and it will run well with this option. Because I find low amoun…
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Thanks for the excellent collection and implementation of vector quantization techniques! It is very helpful for me to get to know about this technique and study the details.
I've integrated these …
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Hi,
first, thank you for providing this great tool!
I have a LFQ dataset of 175 samples x 5787 proteins, log2 transformed protein abundance with ~ 6% missing values (I've filtered out proteins w…
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After an initial evaluation of Sage I'm now working on a more complete integration with our internal TMT pipeline. I was wondering if you had any plans to extend your quantification support for labele…
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When using DIA-NN to analyze multiple DIA mass spectrometry data simultaneously, how should the parameters be configured for data normalization?