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The issue of fac.Config(): for l>20, it shows "Segmentation fault" after entering according to the manual.How should I input configurations?
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Hello @VPetukhov,
Thanks again for Baysor, it is a really efficient tool. I have an issue in the rare case when I don't have enough transcript count per prior cell (as mentioned in [this issue](htt…
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Not sure this is doable or not. What I would like to suggest is to have a 'manual mode segmentation' that can overrule 'predicted segmentation'. Currently, predicted segmentation is based on the patte…
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# Issue Report
## Please describe the issue:
Hello, I received a segmentation fault error when running dorado correct (v0.7.3). The data I am trying to correct is duplex basecalled reads. I have…
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See: https://github.com/sct-pipeline/epi-ap-pa-registration/issues/1#issue-1976925734
you need to add to this open access fMRI dataset Arnaud's data, with our manual segmentation
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**Describe the issue**
While it is possible to build a statically linked executable with musl and the G1 GC, it is not possible to run them. The program crashes right away with the error message `Seg…
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Thank you for sharing the great work, but I had the following difficulties when working with custom datasets. The command line is :python scripts/preprocess_eth3d.py -i data/horse -o output/horse -s d…
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Hi pipeline creator,
I am new to IMC data analysis so please bear my ignorance. My query related to this- https://bodenmillergroup.github.io/ImcSegmentationPipeline/ilastik.html
While trying to im…
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Hi.
Here is a resumé of some explorations I did on 3DSlicer platform to see if it would be worth to use as a software for massive segmentations in different datasets (instead of fsleyes for instance…
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We should agree on an organization strategy for the analysis pipeline.
**Option 1**: Do everything in a jupyter notebook
- By "everything" I mean, download the dataset from openneuro, segment t…