spinalcordtoolbox manual-correction issues

spinalcordtoolbox / manual-correction

Scripts for the manual correction of spinal cord labels

MIT License

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issues

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`-change-orient` flag manipulates the original image

#101 valosekj opened 4 months ago
0
Add an option to specif the orientation to show the image in the viewer

#100 KaterinaKrejci231054 closed 4 months ago
0
Add option to open image in different orientation

#99 valosekj closed 4 months ago
1
Add support for spinal rootlets segmentation

#98 KaterinaKrejci231054 closed 4 months ago
5
3DSlicer exploration - interpolation in 3DSlicer

#97 maxradx opened 5 months ago
0
3DSlicer exploration - versioning strategy

#96 maxradx opened 5 months ago
0
3DSlicer exploration - adding JSON file feature from manual_correction

#95 maxradx opened 5 months ago
0
Revert "Add options for sub-folder and for func sesssions"

#94 rohanbanerjee closed 5 months ago
0
NameError: name 'get_modification_time' is not defined

#93 rohanbanerjee opened 5 months ago
4
Do not use date/time for the QC folder

#92 valosekj closed 6 months ago
0
Merge QCs across labeling sessions?

#91 jcohenadad closed 6 months ago
2
3D Slicer basic exploration

#90 maxradx opened 7 months ago
3
Same suffix name is used to fetch and write labels

#89 sandrinebedard opened 7 months ago
1
Add options for sub-folder and for func sesssions

#88 sandrinebedard closed 6 months ago
1
Adopt BIDS derivative standard for disc labels

#87 jcohenadad opened 7 months ago
1
Unexpected behaviour: CONFIG file is modified by the software

#86 jcohenadad opened 7 months ago
7
Clarify doc to create labels from scratch

#85 jcohenadad opened 7 months ago
1
Confusing behaviour if labels are present

#84 jcohenadad opened 7 months ago
0
Confusing command for path output

#83 jcohenadad opened 7 months ago
2
Package and document better

#82 jcohenadad opened 7 months ago
1
`manual-correction` framework not compatible with `func` contrast

#81 rohanbanerjee opened 8 months ago
2
Allow to specify custom metadata to be included in JSON sidecars

#80 valosekj closed 8 months ago
8
`package_for_correction.py` - make explicit that the script is compatible with BIDS sessions

#79 valosekj closed 9 months ago
0
`-add-seg-only` generates JSON sidecars with `"Name": "Manual"`

#78 valosekj opened 9 months ago
0
Update code with new convention

#77 NathanMolinier opened 9 months ago
0
Add `"Name"` and `"SpatialReference"` key-value pair to JSON sidecar, remove `check_if_modified `

#76 valosekj closed 9 months ago
15
Track algorithm/model used to correct a label

#75 valosekj opened 10 months ago
1
Add support for wildcards (`*`) for several contrasts

#74 valosekj opened 10 months ago
0
Upgrade node12 actions

#73 mguaypaq closed 1 year ago
0
Handle KeyErrors more gracefully if user marks `FILES_REG` as a `qc_fail.yml`

#72 valosekj closed 1 year ago
0
Handle KeyErrors more gracefully if user marks `FILES_REG` as a `qc_fail.yml`

#71 joshuacwnewton closed 1 year ago
1
2023 SCT Course example

#70 valosekj opened 1 year ago
0
Make `check_files_exist` call working for `package_for_correction.py`

#69 valosekj closed 1 year ago
0
Fix track correction function

#68 NathanMolinier closed 1 year ago
0
Use `os.system` instead of `subprocess.check_call` for FSLeyes and ITKsnap commands

#67 valosekj opened 1 year ago
1
`track_corrections` function does not update the config file properly

#66 valosekj closed 1 year ago
3
Do not skip subject if other contrast does not exist

#65 valosekj opened 1 year ago
0
Unify warnings handling

#64 valosekj opened 1 year ago
0
Handle `echo` BIDS tag in `fetch_subject_and_session`

#63 NathanMolinier closed 1 year ago
5
Backup the initial config file?

#62 valosekj opened 1 year ago
0
Skip QC if label file is empty

#61 valosekj closed 1 year ago
9
Error raised by `sct_qc` when dealing with empty masks

#60 NathanMolinier closed 1 year ago
3
Use subprocess instead of os.system to catch keyboardInterrupts

#59 NathanMolinier closed 1 year ago
1
Fix wildcard handling

#58 valosekj closed 1 year ago
0
Add new function to track corrections

#57 NathanMolinier closed 1 year ago
3
Add support for spinal rootlets segmentation

#56 valosekj closed 4 months ago
0
Implement lesion QC

#55 valosekj closed 1 year ago
1
Enable several overwrites

#54 NathanMolinier closed 1 year ago
1
Update wiki

#53 valosekj closed 1 year ago
2
Implement lesion QC

#52 valosekj closed 1 year ago
0