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Hi,
I am wondering what dose the "CellNumer" in the "meta_data_online.txt" mean? Does it represent the putative bacterial cell number in the metagenomic sample?
And why is the "#of16Sreads" lower…
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Dear MicrobeAnnotator team,
I tried to fix the databse with this command:
```
microbeannotator_db_builder --step 9 -t 12 -m diamond --bin_path /net/sgi/metagenomics/thkuo/bin/lib/diamond/ -d /ne…
thkuo updated
4 months ago
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I'm wondering what would be the most appropriate method to go about using Brownie on paired-reads from metagenomic samples? I would like to use both the forward and the reverse reads for long-read err…
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Briefly comment on this issue why you'd be interested in this project.
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Consider ``cond-wf-003.cwl``
```cwl
class: Workflow
cwlVersion: v1.2
inputs:
val: int
def:
type: string
default: "Direct"
steps:
step1:
in:
in1: val
a_…
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I am trying to create both an output file and report file for a set of paired read data. The script runs and generates the ".output" file but does not create a ".report" file.
# Set the path to th…
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What are empirically good values for `l` and `k` when generating a custom database which is going to be used for Oxford Nanopore data?
Anyone some hints here? Would you stick to the default? I am a…
ms-gx updated
1 month ago
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- given a sequence, search (raw) datasets for instances of the virus (sort of the use case that C. Titus Brown describes in a couple of blog posts)
- from the zoo database, create an SBT, and go thro…
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The following functions have multiple rows in the custom function hierarchy table.
Hi! My name is Ilse I want to run Burrito with these data, but it did not work, actually I already check all my f…