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I am using trust4 on fastq of a nonenriched 3' single cell library. After first step of read extraction this how the assembly process unfolds. There seems be an increasing time between each 100k batch…
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Hi,
If I have already aligned my reads against the human reference genome using Dragen, is it a good idea to first take reads with samtools that align to chr7 and chr14 , and then provide this as i…
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Hi
Thanks for your software I do not know why I am not able to merge my metadata
I should mention that my two Bulk samples are output of `micxr` and my two sc(single cell) samples are output of …
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Hello,
I have `MiXCR` data format and want convert it to `scRepertoire` format.
Thank you in advance for great help!
Best,
Yue
```
read_mixcr_n_trans
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Hi everyone,
I'm trying to use vdjer on my data. I perform the tutorial, with the data provided in the package and It's working. Problems appears when I tried with my data.
I have a bam file (medi…
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i run the code just as following:
mixcr align -Xmx15g -p rna-seq -s hsa -OallowPartialAlignments=true ./f1.rmrrna.fastp.fastq.1.gz ./f1.rmrrna.fastp.fastq.2.gz ./f1.vdjca;
mixcr assemblePartial -…
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Hello,
We are using MiXCR/4.6.0 to run the postanalysis command. We got the following error:
```
Version: 4.6.0; built=Sat Dec 09 14:48:42 EST 2023; rev=c9fafa41fe; lib=repseqio.v4.0
…
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Hi ! I would like to run findAlleles to continue the analysis of SHM. However, when I run the findAlleles command with my own data which generated from analysis, no clone information is detected in by…
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depends on server localization ?
e.g.
```
Clone ID Clone count Clone fraction Clonal sequence(s) Clonal sequence quality(s) All V hits All D hits All J hits All C hits All V alignments All D alignm…
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## takara-mouse-rna-bcr-smarter
I used this module to generate results from Mixcr.
## Exact MiXCR commands
``mixcr analyze takara-mouse-rna-bcr-smarter 1B_fastq_R1.gz 1B_fastq_R2.gz result_1…