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A user reported: "Parcellation isocortex is not clear. " Indeed it is not really a parcellation, but it is of course a segmentation. We should discuss the presentation of this segmentation mask.
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This is an already closed issue, but it's just to redirect people there:
I managed to import the generated parcellation automatically into Brainstorm using its "Import anatomy from FreeSurfer folde…
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A model provider has a model of "the sensorimotor peripheral whisker system, modeling trigeminal ganglion, trigeminal nuclei, facial nuclei, and central pattern generator neuronal populations". [[Ass…
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As described in [Aquino et al. (2020)](https://doi.org/10.1016/j.neuroimage.2020.116614), ordering voxels (within parcellations) by cluster similarity enhances the interpretability of carpet plots.
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tsalo updated
2 weeks ago
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I've been noticing that although xcpEngine runs to completion, the Yeo atlas parcellation isn't provided in the "fcon" and "roiquant" output directories. I've tried using both the "fc-24p_gsr.dsn" and…
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### Describe the bug
At least some of the neuroparc templates we are using (e.g., Schaefer) are different from their original sources. We need to resolve this
### To reproduce
_No response_
### E…
gkiar updated
2 months ago
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The meshes are currently maintained as neuroglancer mesh format on atlas VMs. The library needs to be able to forard the site URL, read them and also convert them to commonly used python data structur…
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Encountering this issue when initialising the connectome tool with an image that contains a large number of parcels. Reproduced from user data.
The segfault occurs inconsistently, sometimes occurri…
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The entire import chain needs to be reworked to support our new, more consistent bridging scheme.
An example of how this needs to be done.
```
NIFTTL:nif.ttl owl:imports NIFTT:bridge/anatomy-bridge…
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Dear Rafael,
Thank you for sharing this code. I generated a gene expression matrix using the Destrieux atlas parcellation scheme (aparc.a2009s.nii.gz). The resulting matrix contains 152 regions -- …