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Hi there,
I am trying to install phyloseq to use the pcoa function.
I have the latest version of R (3.4.3) and phyloseq is not supported by it.
I have installed R 3.1.3 as well, hoping downgrading …
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U-CIE is a great tool, so simple idea and robust implementation!
I am trying to apply U-CIE to my soil microbiome data (amplicon - 16s rRNA), especially the sample sites. After the UMAP of the com…
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老师好,我想知道如何更改置信椭圆的线条粗细。
我根据教程进行PCOA分析,可视化pcoares对象,但ggordpoint()貌似没有这个参数;我想使用yyplot中的的geom_ord_ellipse函数,但是我不知道如何将geom_ord_ellipse图层添加到pcoaplot上。麻烦老师解答。谢谢老师!
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Currently, in the same file you need to have the 3D value point and the values to plot in the model. I think a better way to go about this is to have:
- The model (stl)
- The sample names and position…
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Let's add blank removal in FBMN.
Blank Information should be provide in the metadata table (eg. column category "sample_type", variable: "sample", "blank", "pooledQC".
"pooledQC" will be treated lik…
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Add an example showing how pairs of points can be connected on beta diversity map.
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When I was at Waterloo, I moved my code from BioPython to [scikit-bio](https://scikit.bio). I found it much more performant because it uses C-based data structures like Numpy under the hood (the same …
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Hi,
could you please advise, should I rarefy data for plotting beta diversity? I read that for alpha diversity is it not needed.
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Hi!
I'm really excited to use q2-karenina, but for reasons™️, I'd like to be able to use the python API rather than going through the command line.
As I go through the code, there are a number o…
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Hi,
I want to apply this workflow to my data analysis. But I can not understand how the following code was transformed. May I know more about it?
**PCoA on the ranks**
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