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We would like to increase the number of colors that are available for bio-printing. This version should add at least one more color to the existing 5 E.coli-based colors (in addition to the 2 wild-typ…
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Users should be able to download a list of strains or plasmids as a file. Start with PDF, consider other file types like CSV.
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I was wondering if you are aware of any usage of CONCOCT for isolate sequencing samples? Could this be a potential method for identifying plasmids?
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Hi @ajkarloss
Thanks for the tool plasmidfinder.
I am developing a nextflow pipeline to assemble multiple bacterial genomes using long read (ONT) read. I want to apply your tool plasmidfinder t…
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Hi, I have been using kaiju recently and want to use the virus, plasmids and fungi databases from here:
https://kaiju.binf.ku.dk/server
I downloaded the databases `.tgz` files and put each `kaiju_…
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### Describe your feature request precisely
QR codes integrated into the main text area of experiments or resources.
The idea is that when one researcher wants to show an experiment to another, b…
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Hi,
I was wondering if you could provide the reference chromosome dataset used for training this model? Also, could you clarify what the labels for the .tsv files related to these chromosomes should…
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …
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Creating this thread to post potentially useful info about _Bacillus subtilis_ that people come across.
Quick background: _Bacillus subtilis_ is a bacterium that is widely used in industrial biotec…
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Hi,
Really excited about using this tool - I've tried it on a number of plasmids which don't fall into the shipped PTU classification - is there any way to create ones own database/assign novel PTU…