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Hi Kamil,
I would like to ask for your advice with a fairly problematic genome. I used Genomescope to estimate the genome length of the Adriatic sturgeon (Acipenser naccarii, 2n=239 +/- 7 chromosomes…
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Masurca estimates a genome size double the expected number, but Ploidy 1. Is this fine?
I'm assembling a highly heterozygous plant genome using 120X Illumina PE 150 bp, and 98X Nanopore data (N50 1…
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part of #3160 and #1440
Axiomatize terms under 'chromosome number anomaly'
- [ ] polyploidy
- [ ] aneuploidy
- [ ] monosomy
- [ ] trisomy
- [ ] tetrasomy
- [ ] pentasomy
Also, review / …
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https://mp.weixin.qq.com/s/lxbRiFFjVVxF6miGxM6loQ
ixxmu updated
2 years ago
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Hello, I am trying use the V2 to quantify the contamination and ancestry for both tumor and normal in a large cohort, which including tumor and paired normal WGS samples from different populations. I …
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I want to assembly a genome from paired-end Illumina short reads (2x150). I realize this will be fairly fragmented, for my purposes that is ok for now. I just need to estimate the system resources to …
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Dear Chuan,
Thank you very much for your help.
I started with example analysis vv1s and followed the instruction but the following tow errors occur in retain and circos steps.
**1**
/Vitis_vinifer…
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[Parallel tempering](https://en.wikipedia.org/wiki/Parallel_tempering) is commonly used in phylogenetic MCMC analysis to improve mixing between extreme posterior peaks.
This is likely to be an effect…
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Hi,
Thank you for implementing whatshap polyphase, this is a very useful tool for the community! I have a few samples that are nearly diploid but karyotyping suggests overrepresentation in a few ch…
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Hi,
Thanks for the great software.
When I run hifiasm (0.7/0.8) to assemble one huge genome, more than 40Gb with 1.4Tb CCS data on a 4Tb node.
Suppose 4Tb node is enough given 35.6 G…