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In the course of testing for Smörgåsbord , I came across a few error swith the workflow for https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/proteogenomics-dbcreation/t…
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Hi,
1. I have 300 RNAseq raw files and I would like to use this pipeline to create a sample specific database for the downstream proteogenomics analysis. Could you help me with the commands which …
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@cgpu @adeslatt and I are trying to remove a large file I accidentally pushed to main (see below).
We tried bfg (https://rtyley.github.io/bfg-repo-cleaner/) but it didn't seem to remove from the h…
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https://mp.weixin.qq.com/s/LpFE7KRNCMdUl2VYFNOk6w
ixxmu updated
2 years ago
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@cgpu
In the example here - https://www.nextflow.io/example1.html
Will the intermediate files stored in the channel record be stored in the /data directory you mentioned? At the start of the code…
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Date: 05/02/2017
Reported By: Georges Bedran
Email: gbadran_90@live.com
Product: JAFFA Version: 1.08
Platform: CentOS Version: release 6.8 (Final)
…
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**Describing the issue**
Hello,
I'm testing a Spritz installation on our linux server, therefore executing from the command line.
The execution shows an error somewhere between step 10 and 12
…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ErasmusMC-CCBC/ProteoDisco
Confirm the following …
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Galaxy server : usegalaxy.eu
History link: https://usegalaxy.eu/u/_luisfr/h/peptidegenomiccoordinateissue
Tool version : Galaxy Version 0.1.1
While executing **Peptide Genomic Coordinate (followi…
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Krasnov, George Sergeevich, et al. "PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics." Journal of proteome research 14.9 (2015): 3729-3737.