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Unfortunately, some authors generate bogus HGVS expressions that use gene names rather than reference sequences. This issue should provide functionality to generate plausible expressions.
For examp…
reece updated
5 months ago
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Hello Developers,
I've successfully built a pan-genome consisting of 12 genomes using MC without any problems. Thank you for your kind descriptions on GitHub.
Now, I'm planning to find more SVs …
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Page loading for terms with a lot of sequences to align is very slow. https://proconsortium.org/app/entry/PR%3A000036285/ is a good example. All the sequence variants use the same reference sequence, …
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When I used `gofasta sam variants`, it reported this error:
```bash
gofasta sam variants -a /Raid5/lixiang/Indel_accession/reference/NC_045512.2.gb --start 266 --end 29674 --append-snps -t 36 -s 0…
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Hello
Hisat2-build does not work when I use the ss and exon files produced by extract code. Here is the error I get:
Joining reference sequences
Time to join reference sequences: 00:00:05
Tim…
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Hi there!
I'm trying to filter the data to get the Group 0 set, but I'm getting slightly different # sequences than those in the paper.
Q1: I assume that `Processed_K50_dG_datasets/Tsuboyama202…
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Hello,
I'm trying to generate a graph genome starting from variants called from assembly vs assembly alignment. Genomes have been aligned through minimap2 and variants called using paftools call func…
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This is linked to #15 as it leads to production of ambiguous prgs (multiple paths give rise to same sequence)
Clustering code can conclude that there is no meaningful clustering of a set of sequenc…
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Hi,
I would like to use your curated dataset for further neutralizability prediction.
- processing/hiv_reg/dataset_hiv_reg.xlsx
- processing/hiv_cls/dataset_hiv_cls.xlsx
- processing/cov_cls/dat…
sj584 updated
4 months ago
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Here's a thought, something that happens often in practice: you're deserializing something that looks like
```json
{"flags": ["foo", "baz"]}
```
into your own bitflags format which looks like
…