-
Hi,
Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.
-
Dear pychopper developers,
I have been comparing the difference in trimming between `dorado trim` tool and pychopper with `-m edlib` option activated and only using the full-length/default file out…
-
Hello!
Recently I've had to sequence and analyse a RNA-Seq set from T. cruzi RNA. For that, I used Salmon in the alignment-independent mode (aligning to a reference transcriptome).
Typical issues as…
-
The file type fg.gz is very common for RNA sequencing data and it would be great to add (especially since I have a dataset with many of these files)
-
Thanks for making a such a beautiful program. I read the paper and it impute the genes in spatial data using scRNA-sequencing data. I was reading following tutorial
https://uniport.readthedocs.io/en…
-
Hi,
10x has a newish product ["flex"](https://www.10xgenomics.com/products/single-cell-gene-expression-flex) that allows for the sequencing of fixed nuclei.
It works based on [a set of 20 000 pr…
-
1. **Lab Name**: **Microbiology Virtual Lab II**
2. **List of Experiments and Repositories**:
Voges-Proskauer Test
https://github.com/virtual-labs/exp-voges-proskauer-test-au
v1.0.0
Trip…
-
The user guide describes how purity estimation is done for DNA sequencing. But, could a couple of sentences be added that comment on how feasible it is to do with RNA sequencing? It would be interesti…
-
# Single-cell RNA-sequencing Analysis | S_beeni's blog
기초적인 10X scRNAseq data 분석 방법
[https://sbeeniny.github.io/posts/scRNA-analysis-basic/](https://sbeeniny.github.io/posts/scRNA-analysis-basic/)
-
Hello,
I've been using [bionode-ncbi](https://github.com/bionode/bionode-ncbi/blob/master/lib/bionode-ncbi.js) to get SRR ids from a `PRJ**` IDs so I don't have to look for each file individually (ex…