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In the Signac vignette "Analyzing PBMC scATAC-seq", there is a step in which we filter out those features falling in chromosome scaffolds or other sequences instead of the standard chromosomes:
``…
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vision_obj
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Hi~
I hope this message finds you well. I am writing to report an issue related to the t`reecor_harmony` function from your tool, which seems to be incompatible with the latest version of Seurat.
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**Describe the bug**
When I run buildGraph function in R, with the imported data "pbmc_small", some error happened "Error in x[, seq_len(d)] : subscript out of bounds". Is miloR::buildGraph is not su…
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Dear developers,
I was going through this vignette [Integrative analysis in Seurat v5](https://satijalab.org/seurat/articles/seurat5_integration) and would like to reproduce the figures, mainly to …
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**Describe the bug**
Hi there,
I'm having an issue at the "rownames(seurat_milo)
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I'm compiling a list of several error corrections and requests for mapping algorithms into a single issue. These are sorted from hardest/lowest priority (# 1) to easiest/highest priority (# 3), altho…
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Hi,
Is it possible to use a Seurat object instead of Monocle ?
Thanks.
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Hi all,
I am trying to reproduce the Seurat.ipynb vignette to construct a reference object from a seurat object. However, I am encountering errors already from the Harmony step.
The error I get: _…
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Hi, I 'm using sceasy to convert my h5ad file to seurat file, but there are some problem. When I run the code "sceasy::convertFormat("Blood.h5ad", from="anndata", to="seurat",outFile='Blood.rds')", it…