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Hi,
I've been testing the TOGA software using the genomes of two plants from the same genus. My parameters for the software are as follows:
`toga.py ${chain_file} ${bed_files} ${refgenome} ${que…
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This is a new feature but it is a very *BAD* one: when a disk image it attached to a device in simh, the simulator appends some kind of a signature to the disk image. W…
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Hello. We are sequencing some fish genomes and getting weird k-mer histograms. They are skewed, and basically just decrease, see below for an example. We've gotten this now for multiple species. Some …
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Hello, I have encountered the following problems when using the software, can you help me to see where the problem is? thank you
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### LTR_retriever v2.9.1 ###
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In `@odk/web-forms` there is currently an informal separation between what we're calling the "engine" (largely contained in `packages/odk-web-forms/src/lib/xforms`) and the UI (large contained in `pac…
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I would like to scan the C. elegans genome for tandem repeats that have the following properties:
the TRs can range in period size up to 7,500 nt (with a argument of `-p 7500`), because I know ther…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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I am assembling a fungal mitochondrial contig in order to then test for heterogeneity. I already have a fully circularized mitochondrial genome from another assembler that is ~132,000 bp, but I want t…
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Hi,
I'm tring to test Deepvariant in my own panel data and set --regins to the interest regin, but something happend in my output. I provided reference gene hg19 and index it with samtools index, a…
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Hello Shujun,
I have been reading about the EDTA pipeline (the benchmarking paper and the supplementary methods). I have a few questions about the filtering steps. I am a bit confused by which filt…