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**Please include the log file**
$ singularity
Singularity 1.00 (commit: 2ebc2f3f2059b96885416167363bde2e27ece106)
Running under Python 3.9.5 (default, Jul 15 2021, 11:19:42) [GCC 10.3.0]
pygame 2.…
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### Steps to reproduce the issue
I want to install Spack in a Singularity container. Here is the Singularity spec:
```console
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.arc…
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@dbkeator @albertcrowley - perhaps you can test to see if this works.
```
mkdir section1
cd section1
docker run -i --rm kaczmarj/neurodocker:master generate singularity \
--base neurodebian:l…
satra updated
6 years ago
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Hi, I am trying to run virsorter2 on my contig sequences. I keep encountering this error in "circular-linear-split". At first, I thought i had duplicate sequence names but I checked and there were non…
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…
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I am using Linux in the WIndows subsystem.. it doesn't allow me to use docker. and in singularity following output shows..
singularity build viridian_workflow.img Singularity.def
Singularity 1.0b1 …
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Hi, when I want to start lathe I get the following error message:
Building DAG of jobs...
Pulling singularity image shub://elimoss/lathe:longread.
WorkflowError:
Failed to pull singularity image…
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**Describe the bug**
Can not import mujoco_py in singularity, error msg is "OSError: [Errno 30] Read-only file system: '/opt/mujoco-py/mujoco_py/cymj.c' ..." detailed error message is in the attached…
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```
Activating singularity image /vf/users/guibletwm/charlietest/charlie/.snakemake/singularity/85508a5ad215e06ac7e60750d9a291aa.simg
+ cd /vf/users/guibletwm/charlietest/charlie/ref
+ samtools fai…
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The use of `is not` with a string literal argument can result in a warning for Python versions >= 3.8
https://github.com/agshumate/Liftoff/blob/8d1a6246296f0d7000442e16e4ae5ca0069a287f/liftoff/run_…