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Snakemake needs some rethinking about how indicator dependencies are handled for example in cases where we have multiple input variables into the same indicator
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The plugin is absent from the plugin catalog page: https://snakemake.github.io/snakemake-plugin-catalog/index.html
Can see there is an error in the nightly github action e.g.:
https://github.com/…
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Hello Mathias,
I started using the pipeline and successfully analyzed a nanopore dataset of three samples. However, when I increase the number of raw reads to 75, the process becomes very time-consum…
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As you might have heard, the upcoming Snakemake 8.0 will get support for execution backend plugins (https://github.com/snakemake/snakemake/issues/2409). I have therefore moved the tibanna executor of …
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When I run the virsorter setup command, it always report error.
(virsort2) bo@bioinofo2:~$ virsorter setup -d virsorter_db/
[2024-10-24 02:47 INFO] VirSorter 2.2.4
[2024-10-24 02:47 INFO] /home/b…
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**Describe the bug**
In snakemake (v8.4.7), "--cluster-status" is not supported, and thus the "cluster-status" in [config.yaml](https://github.com/gbouras13/hybracter/blob/9250ad5a0ed91b04d7976503db8…
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I just did a new install of CLAW (and required other packages), and I'm getting an error trying to run the example:
```
#snakemake --profile profiles/slurm --use-conda --keep-going
snakemake: e…
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**Is your feature request related to a problem? Please describe.**
My snakemake workflow can take several hours to complete. On rare occasions, an input file to the beginning of the workflow gets upd…
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