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Dear Kevin Riehl,
I have the issue, both conda and mamba have issue with my system.
![image](https://user-images.githubusercontent.com/70749594/229532984-64ad6ef6-0215-4a96-99c7-85a2b6aae515…
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## Problem description
While using LTRharvest this error pops up:
```
Assertion failed: (refrng.start leftLTR_5), function gt_removeoverlapswithlowersimilarity, file src/ltr/ltrharvest_stream.c, …
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Hello,
I don't have `sudo` privileges on our HPC platform, so I could not use the `docker` nor the regular installation method. Instead, I am trying to install `tephra` via `singularity`.
System…
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**Describe the issue**
Hi! When running the software with the latest version of RepBase (28.03), I get this error message:
```
RepeatMasker version 4.1.5
Search Engine: NCBI/RMBLAST [ 2.11.0+ …
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First of all, i downloaded Araport11 from www.arabidopsis.org
Then I used cgat-apps to generate a gtf file out of the file i downloaded
`$ cat Araport11_GFF3_genes_transposons.201606.gff | cgat gff3…
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As per the discussion in the community call today, I am hereby creating an "issue" to stimulate creation of a core expression data model so we can build tools that are commonly usable. (Note that Stra…
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Hi,
I tried using `format_database.pl` to format the `repbase` data. I basically concatenated all the references.
`cat RepBase21.01.fasta/*.ref RepBase21.01.fasta/appendix/*.ref > repbase_all.fasta…
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Dear all,
The proposal has been made to obsolete GO:0003964 RNA-directed DNA polymerase activity & replace it by its parent
GO:0003720 telomerase activity
see https://github.com/geneontolo…
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Hi @guipenedo , I used your substring dedup script to perform deduplication on a dump of cc and did some manual inspection. I find that some resulting duplicates a bit strange.
For example,
```
…
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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…