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this might be of use to people looking to grok genome overlaps etc.
[notebook permalink](https://github.com/dib-lab/genome-grist/blob/051a96210958afcf7f1d61ce11537796339dc64e/hash-upsetr-example.ip…
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Junjun大神您好！
对您的开发速度赶到无比惊讶。
感谢您的努力。
我遇到了一个问题，当我试图运行
```
library(bulkPseudotime)
library(ClusterGVis)
# load test data
data(exps)
# check
head(exps,3) #到这步没问题
```
可是到下一步时
`pse…
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* read kprocessor tables?
* download genomes a la genome grist (UPDATE: see https://github.com/ctb/get-some-ncbi-genomes)
ref https://github.com/sourmash-bio/sourmash/issues/1353
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Hi,
I encountered this issue when running readCounts function, I am now following this manual: https://bioconductor.org/packages/release/bioc/vignettes/ASpli/inst/doc/ASpli.pdf particularly the Ex…
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I want to use on my chipseq this tools. I have alligned on hg38.
```
library("ChIPseeker")
library("TxDb.Hsapiens.UCSC.hg38.knownGene")
setwd("~/Desktop/RESULTS2rip/")
files=list.files("chr_hg3…
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Dear Yu,
I generated a gseaplot2 result via
ego
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My apologies in advance if this issue has already been addressed and resolved:
Kindly I need help with the following, invoking upset from Rmarkdown in R-studio "knit to HTML" is not printing out a…
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## steps to reproduce:
TxDb object construction:
`library(ChIPseeker)`
`library(AnnotationDbi)`
`library(GenomicFeatures)`
`TxDb.Drerio.ucsc.geneid = makeTxDbFromUCSC(genome = "danRer7", tablen…
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Hello,
I am trying to visualize the co-occurrence of mutations in 140 samples. I would like to see the ability to include the "null" set (the ones where samples have none of the potential elements…
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Hi Guangchuang,
When I'm using clusterprofiler, I got different results compared to agriGO (http://bioinfo.cau.edu.cn/agriGO/analysis.php) using the same set of genes.
For example GO:0006412, i…