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I've always thought that OWL named graphs are a good mechanism for modeling variants. In the simplest case, create one description for common assertions and one for each variant. Then there are two sc…
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I got this error when I run the following commands;
```
singularity pull clairs.sif docker://hkubal/clairs:latest
singularity exec --bind /truba/home/erdikilic/pacbio_nd_t:/data clairs.sif /opt/b…
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**What is this request referring to?**
CDS variant
**What is the name you would like SO to give the term?**
CDS_variant
**What is the definition that you would like for this term?**
A variant…
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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With #754 we're halfway to also supporting inframe indels so we should just do the rest of the work necessary to support those types of proximal variants.
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Are there any examples or best practices for doing parameter sweep type analysis with the batch runner?
I'd like to be able to do a large batch run with a number of varying parameters, and then run…
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### Description of the bug
I ran the current version of pgsc_calc with 63 scorefiles on a single sample and got this error:
```
FATAL: container creation failed: mount /proc/self/fd/4->/usr/l…
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## Attachments
- attachments wurden mit einem alten gem "attachable" über
die Model Class "Media" eingebunden (v.a. Image, auch andere??)
- punktuell mit active storage ersetzt
- wahrscheinlich ka…
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We aim to create the `.mu` and `.UD` resource files, which are auxiliary files for the SVDPrefix, using the CHM13 variant call format files (VCFs) available at [this link](https://s3-us-west-2.amazona…
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Hi, thanks for your excellent tool!
I am wondering about the choice of plink. Should I use the same chr in step1 and step2&3 or just randomly choose in step1? Because I noticed that step1 used chr1 p…