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Based on chat with Kim this morning.
At present we include all EXP codes.
Then, we import the GOA file which includes mainly IEA data, but the next version will also include PAINT IBA/IBD, and an…
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[fastq.stats.txt](https://github.com/sanger-pathogens/Bio-Tradis/files/1508288/fastq.stats.txt)
[CP011972-tiled.out.CP011972.tradis_gene_insert_sites.txt](https://github.com/sanger-pathogens/Bio-Tr…
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Sir,
I was running the latest orthofinder:
`./orthofinder -t 512 -a 512 -M msa -A muscle -T raxml -f /gondor/zillur/orthology_new/july_5/`
It gave me almost everything but the alignments and gene t…
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Hi there,
I was trying to run for 44 apicomplexan organisms with the latest version (1.1.8). I am having the following problem. `[zillur@genomics OrthoFinder-1.1.8]$ ./orthofinder -M msa -A muscle -T…
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write a PB_REF for the ones ortholog predictions don't have a specific publication to cite
....we should use use my old book chapter which describes in detail how the orthology calls are mad…
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Hi,
I'm very interested in using this application, and I'm trying to make a docker image for it (I'll share it).
I have trouble understanding how to run a fully working version of the application, I…
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Here they are:
foodbank
foodbanks
foodbank's
rictus
rictal
interramal
Benedictus
Magnificat
safranine
safranin
ultramicrotome
toluidine
phosphuretted
phosphyl
phosvitin
phosphoprotein
…
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Hi Jamie,
I was wondering if there is a mapping file of eggNOG where I could relate the top hit back to the actual NOG name + number (rather than the accession number for that particular protein). …
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I went through most unknown conserved to human yesterday.
These are the ones I still need to check
- [x] SPAC6B12.04c 2-aminoadipate transaminase (predicted) ->7
- [x] SPBC21H7.03c acid phosphat…
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cox1
- [x] PPR S.c. PET309, S.p. ppr4, regulation of... (change to ISO)
- [ ] check orthology
"LRPPRC (leucine-rich pentatricopeptide repeat- containing) is a PPR protein required for the st…