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There is a need to agree on the columns that we expect for the extended MAF file that cBioPortal will support.
Initial analysis by @onursumer shows that the MAF columns required for proper rendering…
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Hi Marco,
I am trying to set the color of a protein segment to red by breaking the structure into 3 segments that are then added to the viewer. Everything seems to work fine expect when the structur…
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Dear Meren:
I have problems at anvio test.
Since my mac book got only 8G memory. I tried to install anvio both at Macbook and Linux cluster ( centos. readhat). I am hoping that I can try the clusterin…
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The cyanine labelling dyes are missing in ChEBI.
Cy3 and Cy5 are dyes used in comparative genomic hybridization, and in gene chips which are used in transcriptomics. They are also used to label prote…
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# Solvation models
Electrostatic and solvation models can be roughly divided into two classes (Warshel, 2006; Roux 1999; Ren, 2012) explicit solvent models that treat the solvent in atomic detail and…
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Hello,
a new version of coimmunoprecipitation method has been used in a recently published paper (PMID: 17227146). The new method is called VIP (visual immunoprecipitation). It differs from the classi…
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Chromatogram visualisation
http://edamontology.org/operation_3203
child of http://edamontology.org/operation_0004
Relate more to mass spectrometry, retention time? There are several types of chroma…
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Hello,
a new version of coimmunoprecipitation method has been used in a recently published paper (PMID: 17227146). The new method is called VIP (visual immunoprecipitation). It differs from the classi…
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Add field `ncsOperatorList` with transformations to construct the full crystallographic asymmetric unit.
Example from [1a37](http://www.rcsb.org/pdb/explore/explore.do?structureId=1a37):
``` JSON
[
…
arose updated
7 years ago
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Hello,
we are trying to equilibrate the system but when it arrives to "mdx.wait()" it takes too long (more than 2 hours and still running) and in the documentation says it will take 5 minutes.
``` py…