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I'm trying to prepare rmsk.bed file, Im convert my RepeatMasker .out file to TAB-delimited file, its still not working, I make that file the same as yours in "simulated data". Here my rmsk.out file. P…
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I am running Cactus with 27 fungal species, and I can't get it to complete. It keeps stopping after giving a message about disk usage and then saying it has jobs waiting to run. I'm on a slurm cluster…
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Hi,
thank you for providing this amazing tool! I successfully run it with two sequences, yet encountered problems with a third. It seems that RepeatMasker annotates TEs in stage3, but then I get this…
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```
R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
…
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Dear, oushujun
Thank you for creating a great tool.
This issue is question, not bug.
My question is that total length of LTRs annotated by RepeatModeler(with -LTRStruct) and RepeatMasker is…
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Hello, author, EarlGrey's one command has brought convenience to our genome annotation. I struggled to run RepeatMasker and RepeatModel, and they gave such a result. How can I get a similar table from…
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Hello
I had an issue with mitetracker. When it is installed from the transposon_annotation_tools_env.yml, it is installed with python 2.7 which is not correct according to the official repository.
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Hi, the ReadMe file says "If you want to use your customs reference, you can use the -gene -te options:". We understood this as being able to use your code on other genomes than the mouse and the huma…
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Hello.
I'm a layman, I've heard of EDTA before, but have not tried it, I've recently paid more attention to MITE, I noticed that Databases inside the rice6.9.5.liban, it is the output of EDTA and man…
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When running TELR, my job is failing with the following series of errors:
```
Error: Sorted input specified, but the file /path/to/intermediate_files/vcf_ins_repeatmask/1034.vcf_ins.fasta.out.gff ha…