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Hi,
I am trying to get the fromcellranger pipeline to work on MacOS Catalina 10.15.7
When I run
conda env create -f scTAR_cellranger.yml
(after modifying the yml file prefix to /home/miniconda3/…
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Hi! Thanks so much for your tool!
I see in your paper the 3 datasets you applied SoloTE to used 3' scRNA sequencing or bulk RNA sequencing. Can this tool be applied to scRNA seq using the Chromium …
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When executing the code provided, the following error occurs:
```
> mRCCv5
An object of class Seurat
22921 features across 102723 samples within 1 assay
Active assay: RNA (22921 features,…
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Hi!
Many thanks for all you development efforts!
I have six data sets that I would be interested in benchmarking with Kallisto-bustools, however I just found out that kalllisto bus only suppor…
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Hi,
I am trying to use scGPT for my scRNA-seq annotation, but I met some installation error as follwoing:
Getting requirements to build wheel ... error
error: subprocess-exited-with-error
…
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Hi authors,
I'm very interested in the MaxFuse algorithm and I'm attempting to reproduce the tri-modal integration task shown in Figure 5 of your paper. I've been following the procedures outlined …
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### Project short name:
MyocardialInfarctionAmruteCITE
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/12Lw3o…
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We try to use ecotyper in our scRNA-Seq datasets with de novo model in ecotyper.
We need the Token of CIBERSORTx for docker images. And we have asked for the Token from the website.
Could you share …
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Hi, i created a loupe file from my seurat object(scATAC-seq), like this:
`DefaultAssay(seu)
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Hello dear author, it's exciting to find this new tool!
I've been following Mellisa but gave up due to the lack of detailed annotation of genome features, could you please give a brief suggestion wh…