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## Expected Behavior
`metaeuk` run normally with other genomes, but crash with a large pine genome (Pinus tabuliformis, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA784915). Do it not support the ver…
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To follow-up on the bigGenePred idea:
(http://genome.ucsc.edu/goldenPath/help/bigGenePred.html ) it allows one to translate the underlying reference codon sequence to display. There won't always b…
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This is what I see if I specify JDK 1.7 instead of the default:
-----> Creating build...
- file: slug.tgz
- size: 39MB
-----> Uploading build...
- success
-----> Deploying...
rem…
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Hi,
I am interested in some particular gene in my genome sequences, and unfortunately, Prodigal doesn't predict it. It predicts a shorter version that does not code for the right protein. When I look…
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Hello,
For organisms that have point mutation detection supported, amr-finder-plus reports the amino acid change (e.g. S83F for QRDR mutations for Salmonella).
Would it be possible to also repor…
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I develop epoll linux on codon
Don't work epoll_wait
```
class epoll_data:
ptr: Ptr[byte]
fd: i32
u32: u32
u64: u64
def __init__(self):
pass
d…
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When use pyGTF, i Encountered KeyError: 'ID'
my code
import sys
from pyGTF import Transcript
from pyGTF import GTFReader
with GTFReader('A.gtf',flag_stream=True) as fi:
for i in fi:
…
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Could imagine a step which annotated MT with MFAnnot (https://github.com/BFL-lab/Mfannot) and then either used different locus prefix (eg add an M to the locus name), to annotate these.
Generally …
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Hi,
I have a set of peptide sequence but some of them have missing value such as "AMRE*NSGYSTLT". Is there a way to deal with this to include them in the motif?
Thank you.
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Hi Brian,
There seems to be a bug in how EVM calculates phase for the gff3 output. Here's the problem - one of our users has submitted genome annotations predicted by EVM to us, including both a gf…