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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v1.3.0
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
Other workflo…
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Dear Icarust,
I am testing your software and I just noticed that the fastq files that I obtained from Dorado (HAC) do not contain the start_time in the fastq header. Is this info available somewher…
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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Hi,
I was slightly confused about how the demultiplexing with custom barcoding works. I have a read set up as follows:
> 5' Read Primers -- Adaptor 1 -- Barcode (32nt) --Spacer [known sequence] …
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Hello everyone!
I am currently writing a pipeline with Snakemake. And i wanted to include dorado into it. So know i looked up if dorado has any conda installs but i did not find any that are worki…
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# Issue Report
## Please describe the issue:
Occasionally the GridION is producing corrupt gzipped fastqs (example read below), it is doing this non deterministically as far as I can tell, rebas…
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Hi @Adoni5,
I am facing the above mentioned error while running readfish in MacOS with apple silicon. Also I am connecting via wifi using my mobile hotspot.
I have verified the readfish toml file …
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@csoneson @mbstadler Let's use this issue to discuss the migration from SparseMatrix to NaMatrix.
### Some background
NaArray and NaMatrix objects are still under development in the **SparseArra…
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Hi,
In both single-cell and bulk RNA sequencing, we use UMIs (Unique Molecular Identifiers). Two reads with the same UMI correspond to the same cDNA molecule. It would be great if we could feed inf…
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PS C:\Users\estja\Downloads> scoop download clash-verge-rev
INFO Downloading 'clash-verge-rev' [64bit] from extras bucket
Clash.Verge_1.7.5_x64_portable.zip (35.2 MB) [=============================…