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### Ask away!
Hello,
I got an "project version outdated" message (bottom) when I ran wf-clone-validation today. Can you please provide or direct me to directions on how to update this? I'm not s…
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Hi,
I am using golden gate assemblies to create modular plasmid libraries. I currently am looking at potentially a 80 combinations of plasmids that are quite similar. (4 Promoters x 8 Gene A x 8 Gene…
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Hello,
First I would like to thank you for your very well-built and comprehensive tool. :)
We are using shigatyper to characterize some Shigella and EIEC isolates but we are finding some inconsist…
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### Description of the bug
I wanted to retain from some samples only plasmid and virus sequences, so I used `--tax2filter "cellular organisms"` but that failed (see below). I assume that could be fix…
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I met the error when installing the SPAdes.
Log is here
[log.txt](https://github.com/Xingyu-Liao/LongRepMarker_v2.0/files/8650904/log.txt)
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Is there a way to select and download the plasmids of refseq?
Refseq has reference plasmid sequences that can be downloaded from `https://ftp.ncbi.nlm.nih.gov/genomes/refseq/plasmid/`.
They are …
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Currently we don't differentiate between genes and proteins, we just lump them all under gene. However, most go annotation is at the protein level. When we have a go annotation, and we ask quickgo …
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Hello
I ran iss with a set of genomes some of which have some contigs (1, but I didn't get an error when I attempted it.
Thanks
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to resolve discrepencies
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Ideally, we should avoid having any conditional formatting in cells users can edit (green or blue header). If we do want to have it, we should be sure that's necessary/important. (The problem is that …