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Using the BOLD API (latest stable version) to search for different species genus we noticed that for one of them we were running into errors. At first it seemed like an issue with missing columns in t…
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# Binning with CONCOCT
What makes CONCOCT an unsupervised binner is that it bins based on the characteristics of the sequences (sequence composition) and coverage information. Tetranucleotide freque…
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Hi there,
Having set up `alphafold` in my machine (NVIDIA GeForce RTX 2080 GPU, ), which I've tested successfully, I'm now coming across the error below running it on a 5586 AA predicted protein (f…
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Launching `prophyle index bacteria.nw bacteria_idx` with 8 threads (but also 4, only works with 2) on a machine with 16GB of RAM (Karel's office) exceeds memory while assembling. The problem is node `…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
3.4.3 (default, Nov 28 2017, 16:41:13) \n[GCC 4.8.4]
CPython
Linux-4.4.0-109-g…
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Hello,
I'm screening an annelid genome with the FCS-GX database. The test data was successful, and the screening appears to work with the annelid data until generating the action report (the *.tax…
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Greetings, trying to build default genomic data-bases used to run kraken2 on an HPC cluster. The database location is set for my scratch directory, which i believe has 15TB of space available. Regardl…
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Our schema nominally defines an error result as this:
```json
Error:
required:
- code
- message
properties:
code:
…
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I set up a heavily scattered (~1000x) workflow to run overnight on my local machine (Mac OS Catalina, Intel hardware). The machine is set up to never sleep and was connected to AC power. My Cromwell c…
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Hi There,
I am trying to submit TPA metagenomic assemblies using `webin-cli-3.4.0.jar`. Most of my files are being validated just fine but for a small proportion of files, I get the following ambig…