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## Objective
Integrating the clinical laboratory data with clinical phenotypes to enable effective data aggregation and search.
## Context
@mellybelly requested a strategy on how to integrate com…
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Determine which ontologies to use for transcriptomics data (meta data templates)
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Dangling edges found for Panther. See https://monarch-initiative.github.io/monarch-qc/ for the report; https://data.monarchinitiative.org/monarch-kg-dev/ for the data.
Find out why and suggest a r…
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Problems with GeneDB
- [ ] GeneDB links updated but not implemented https://github.com/geneontology/go-site/issues/1779 https://github.com/geneontology/go-site/issues/1777
- [ ] As of the May 2022…
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### Description of feature
Currently super long:
```
{
"name": "AssertionError",
"message": "Gene requires to specify a organism name via `organism=` or `bionty.settings.organism=`!",
"stac…
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We would like to explore outputting the evidence for a GPAD annotation as the least common subsumer of the evidence codes used on all the edges in the explanation for an annotation.
Special case: d…
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**Query:** [similar_to.json](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/not-none/1.1/similar_to.json)
**PK:** 2d5422be-ee30-4133-bbe3-6ae4c2d530a9
**HGNC:28912**
**[Resu…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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Looking at the output of a loader run: http://tomodachi.berkeleybop.org/amigo/search/model_annotation
The values in the return documents that drive this interface are like:
```json
{
…
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Hi Alex,
A (reproducible) issue ("GSEA hangs") was posted on the `clusterProfiler` GitHub.
See: https://github.com/YuLab-SMU/clusterProfiler/issues/659#issuecomment-2027820878, and posts below tha…