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Hi,
I followed the instructions on deepvariant quick start (https://github.com/google/deepvariant/blob/r1.6/docs/deepvariant-quick-start.md) to create deepvariant_1.6.0.sif and deepvariant_1.6.0-gp…
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Hi,
I have installed the Beacon 2 RI and imported the Cineca test dataset from the GUI RI. I can query the endpoints "individuals", "biosamples" and "g_variants" and I can do filtering.
I would …
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**I have faced the problems**
hg38+hg38_1000G_test_20bp-NGG-SpCas9.txt_guides.txt_gencode_encode.hg38.bed_6_2_2_chrX_KI270881v1_alt.total.cluster.txt.tmp_sort.txt file have specific symbols
in thi…
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IGV Desktop can "group" alignments by various attributes. The same has been requested for igv.js. Especially group by read group and tag.
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They may be some missing fields for the SV views:
- [x] Cancer observations (both somatic and germline) are not appearing in the SV view in Scout. However, they are visible for SNVs! It seems that …
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**Is your feature request related to a problem? Please describe.**
Highlight variants in seqr submitted by the Broad RDG to ClinVar
**Describe the solution you'd like**
To better track variants c…
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Hi , my command is `./scripts/guacamole somatic-joint /home/zhipeng/soft/guacamole/src/test/resources/synth1.normal.100k-200k.withmd.bam /home/zhipeng/soft/guacamole/src/test/resources/synth1.tumor.10…
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Originally reported by: **Brian Craft (Bitbucket: [brian_craft_](http://bitbucket.org/brian_craft_), GitHub: Unknown)**
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Mapping protein to other coords would…
reece updated
7 months ago
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The QotM raised a number of issues related to Biolink prefixes, several of which may be worth further investigation.
**Variant IDs (and any cross-mapping)**
- [CLINVAR:1333833](https://www.ncbi.…
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At the end of every week (after our meetings), we should provide a summary of the work we have done in the last week, in 4 - 10 bullet points.
@rays22 can you please, for every week, make a commen…