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### Description of the bug
Dear All,
I am running sarek v 3.0.2, command as pasted below.
Seems like is not finding the referene genome.
Could you please assist me?
Best
here is my output…
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Hello,
Thanks for creating this tool! I'd really like to use it. However, I'm a bit confused about how to parse all the output files from the many repeat identification tools.
I would apprecia…
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Hi @oushujun,
I am running EDTA as follows:
`EDTA.pl --step all --curatedlib ../Brassicaceae_repbase_all_march2019.fa --sensitive 1 --evaluate 1 --anno 1 --threads 10 --genome athchr1.fasta`
I …
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Dear Daniel,
Thanks for your help, I have successfully converted the format of NCBI.
I already have the RMRBSeqs.embl file that RepeatMasker needs, but how do I get the file corresponding to the --…
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**Describe the issue:**
I am observing some weird genotypes calls, when I call variants from RNA-seq data. I've followed the nicely written tutorial, the only thing I changed was a minimum coverage o…
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I ended up with this error message after using Maker in the Main Galaxy instance:
```
Possible unintended interpolation of @2 in string at /cvmfs/main.galaxyproject.org/deps/_conda/envs/__maker@2.…
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**Describe the issue**
I mask the simple repeat in some genome. I have tried to use larger memory and less thread, but not helpful.
**Reproduction steps**
1. Steps to reproduce the behavior…
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I'm using RepeatMasker to serially mask my genome assembly with different libraries. First soft masked simple repeats. Then hard masked the output with Tetrapod elements from Repbase and this output i…
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* link to support ticket: ...
* website: https://github.com/Yandell-Lab/maker
* installation docs: ...
* toolchain: `2022a`
* easyblock to use: `...`
* required dependencies:
* [x] bioperl
…
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Following your pipeline, I want to estimate the copy number of CKD20 genes in chr14 for no-human species, and show you some steps in below
```
#1. First, I extra subset of bam and ref.fa files for…