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Hello!
I did direct RNA sequencing last week using MinION and I basecalled the data using Guppy's RNA config.
I have the sample's full genome (fasta) and its annotation (GFF3) as well as 1.4 milli…
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**Description**
We want to track the progress of a plate through from arrival with Sample Management to data archived
**Who the primary contacts are for this work**
Liz / Emma / Steve
**Knowle…
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Hi Haibao
When I run `python -m jcvi.compara.synteny depth --histogram ben.tha.anchors` I got this:
Genome ben depths:
Depth 0: 1,186 of 25,904 (4.6%)
Depth 1: 21,423 of 25,904 (82.7%)
Depth 2: 3…
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Hi, I am running the following lines of code on a multiome dateset to get motif hits for the accessibility topics.
```
mira.tl.get_motif_hits_in_peaks(atac_data, genome_fasta='hg38.fa',
…
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In [JASPAR UCSC tracks](https://github.com/wassermanlab/JASPAR-UCSC-tracks/blob/master/README.md) I read that scores in the bigbed files are p-values which have benn
> (scaled between 0-1000, whe…
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Hi
I am using bactopia off line. I have my fastq folder ready and prepared. However, whenever I run the multiple samples FOFN command, it crushes. I am new to all this. I hope someone can help. belo…
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ref https://github.com/sourmash-bio/sourmash/issues/1652, you want to be able to sketch certain ksizes/moltypes for certain identifiers only, but on a large scale. how can we best do this?
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**1. What were you trying to do?**
Call variants from GAM using vg call. Followed [wiki instructions](https://github.com/vgteam/vg/wiki/Whole-genome-calling-and-genotyping).
**2. What did you…
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### 路由地址
/oup/journals
### 完整路由地址
/oup/journals/:name
### 相关文档
https://docs.rsshub.app/journal.html#oxford-university-press
### 预期是什么?
can work
### 实际发生了什么?
I input `/oup/jo…
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```
[Jan 14, 2022 14:17:10] ERROR GenomeBrowser Failed to preprocess track GSM646318_GM12878_H3K27me3_rep1_GSM646332_GM12878_Input_rep1_200#d3379
Caused by: ERROR IllegalStateException File /Users/O…
olegs updated
2 years ago