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@sagnikbanerjee15
I found that in the final output, many genes are located in repeat regions.
It seems the soft masking of the genome doesn't work well.
Got any idea?
Thanks
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This is a awesome list! I follow and read through it off and on. Since the number of articles have really grown and would continue to grow.
Would you like to see this in reverse chronological orde…
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genomad end-to-end --cleanup --splits 8 '/home/wenluyin/GCF_009025895.1/ncbi_dataset/data/GCF_009025895.1/GCF_009025895.1_ASM902589v1_genomic.fna' genomad_output genomad_db
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Hello there, amazing work! I was reading through the ESM3 preprint and saw that there was some work done to measure the ESM3-open function prediction performance, so I wanted to test the function pred…
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**Is your feature request related to a problem? Please describe.**
VariantValidator, when having received too much work for one request, times out. This happens when, e.g.,
1. A large variant is sub…
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Hi Dr. Wang,
Sorry for submitting the issue to the wrong repo. I actually was using the script and model weights in this repo to reproduce your results in the NAR paper. The question remains the sa…
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Hi!
I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command:
platon contigs.fasta --db ~/Databases/db --output platon_accu --mode accura…
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Met up with @aturner-epcc and @jcohen02 today and we discussed that the lesson needs more exercises. Adding this as a placeholder to look for places where we might add more exercises.
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Hello,
I am trying to use voronota to calculate clashes between chains, as a filtering method to distinguish between potential OK and definitely bad protein:protein predicted models.
I am getting …
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Hi @edwintse @TomkUCL @lindapatio @jemimahaque
We need more about the project on the wiki - describing the story so far.
https://github.com/StructuralGenomicsConsortium/CNP4-Nsp13-C-terminus-B/…