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Hi
I am using repeatMasker to mask my de novo genome, and assembly is at scaffold level. When I ran the repeatmasker with following command : `RepeatMasker -xsmall /path/genome.fa ` . I got only…
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Hi
Unfortunately, I discover your project too late and ran BRAKER2 and additionally I ran InterProScan which produced GFF3, TSV and XML. It appears that the InterProScan's GFF3 file does not contain …
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awk: fatal: cannot open file `/home/gnomeadmin/te_analysis/dnaPipeTE/dnaPipeTE//Trinity_run0/chrysalis/readsToComponents.out.sort' for reading (No such file or directory)
sed: can't read /home/gnomea…
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Hi,
Can somebody help me with the error message below, please? I was running RepeatMasker, and everything was running smoothly for about 2 hours, then suddenly, this message popped up. Here is the …
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I have generated my repeat library and when I use it to analyze my data I get the above error. I have googled and I am not getting a clear answer. I am attaching the log file with the detailed error f…
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**Describe the issue**
This command "RepeatMasker -parallel 63 -xsmall -species Primates temp/chrY.fasta" failed with the error message
FastaDB::_cleanIndexAndCompact() - Error could not open file…
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Hello Shujun Ou:
when I run the LTR_retriever, It happened errors as follows:
ERROR: RepeatMasker is not running properly!
Please check the file Genome.fa.ltrTE.mask.lib and Genome.fa.ltrTE.trunc…
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Hi,
We are currently working on identifying gRNA sequences targeting sub-families of transposable elements. The purpose is to test "consensus" sequences that we identified to show that these sequen…
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Hi, I use dnaPipeTE frequently and it's great. I would like to get it working on my universities cluster but require some changes which I cannot work out. Specifically, my cluster has repeatmasker and…
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* link to support ticket: https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=86466
* website: https://www.repeatmasker.org/
* installation docs: https://www.repeatmasker.org/Rep…